Last updated on 2022-09-11 12:56:55 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| contribution | 6 | 7 | |
| ezcox | 13 | ||
| ggpolar | 13 | ||
| IDConverter | 1 | 12 | |
| metawho | 13 | ||
| regport | 13 | ||
| sigminer | 4 | 9 | |
| tinyscholar | 13 | ||
| UCSCXenaShiny | 8 | 5 | |
| UCSCXenaTools | 6 | 7 |
Current CRAN status: NOTE: 6, OK: 7
Version: 0.2.2
Check: data for non-ASCII characters
Result: NOTE
Note: found 3 marked UTF-8 strings
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: ERROR: 1, OK: 12
Version: 0.3.3
Check: tests
Result: ERROR
Running 'testthat.R' [4s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(IDConverter)
>
> test_check("IDConverter")
trying URL 'https://zenodo.org/record/6342397/files/icgc.rda'
trying URL 'https://zenodo.org/record/6342397/files/pcawg_full.rda'
trying URL 'https://zenodo.org/record/6342397/files/pcawg_full.rda'
trying URL 'https://zenodo.org/record/6342397/files/pcawg_full.rda'
trying URL 'https://zenodo.org/record/6342397/files/pcawg_full.rda'
trying URL 'https://zenodo.org/record/6342397/files/icgc.rda'
trying URL 'https://zenodo.org/record/6342397/files/tcga.rda'
trying URL 'https://zenodo.org/record/6342397/files/pcawg_full.rda'
[ FAIL 4 | WARN 32 | SKIP 0 | PASS 4 ]
== Failed tests ================================================================
-- Failure (test-roxytest-testexamples-convert_icgc.R:13:3): Function convert_icgc() @ L25 --
`convert_pcawg("SA170678")` did not throw an error.
-- Failure (test-roxytest-testexamples-convert_pcawg.R:19:3): Function convert_pcawg() @ L38 --
`convert_pcawg("SA5213")` did not throw an error.
-- Failure (test-roxytest-testexamples-convert_pcawg.R:21:3): Function convert_pcawg() @ L38 --
`convert_icgc("SP1677", from = "icgc_specimen_id", to = "xx")` did not throw an error.
-- Failure (test-roxytest-testexamples-convert_tcga.R:13:3): Function convert_tcga() @ L24 --
`convert_pcawg("TCGA-02-0001-10A-01W-0188-10")` did not throw an error.
[ FAIL 4 | WARN 32 | SKIP 0 | PASS 4 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 4, OK: 9
Version: 2.1.7
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'BSgenome.Hsapiens.UCSC.hg19', 'copynumber'
Flavor: r-release-macos-arm64
Version: 2.1.7
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘BSgenome.Hsapiens.UCSC.hg19’
Flavor: r-release-macos-x86_64
Version: 2.1.7
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘copynumber’
Flavor: r-oldrel-macos-arm64
Version: 2.1.7
Check: installed package size
Result: NOTE
installed size is 5.9Mb
sub-directories of 1Mb or more:
libs 2.0Mb
Flavor: r-oldrel-windows-ix86+x86_64
Current CRAN status: OK: 13
Current CRAN status: NOTE: 8, OK: 5
Version: 1.1.8
Check: installed package size
Result: NOTE
installed size is 6.9Mb
sub-directories of 1Mb or more:
doc 1.4Mb
shinyapp 3.5Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Current CRAN status: NOTE: 6, OK: 7
Version: 1.4.8
Check: data for non-ASCII characters
Result: NOTE
Note: found 2 marked UTF-8 strings
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64