CRAN Package Check Results for Maintainer ‘Michael Kleinsasser <mkleinsa at umich.edu>’

Last updated on 2022-09-11 12:56:50 CEST.

Package ERROR NOTE OK
AEenrich 13
bama 4 9
FEprovideR 13
gigg 1 12
INTRIGUE 6 7
lcra 13
MetaIntegration 13
PPMR 1 12
qif 13
snSMART 5 8
StackImpute 6 7
SynDI 6 7

Package AEenrich

Current CRAN status: OK: 13

Package bama

Current CRAN status: NOTE: 4, OK: 9

Version: 1.2
Check: installed package size
Result: NOTE
     installed size is 5.3Mb
     sub-directories of 1Mb or more:
     libs 4.4Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Package FEprovideR

Current CRAN status: OK: 13

Package gigg

Current CRAN status: NOTE: 1, OK: 12

Version: 0.2.1
Check: installed package size
Result: NOTE
     installed size is 5.5Mb
     sub-directories of 1Mb or more:
     libs 4.9Mb
Flavor: r-oldrel-macos-arm64

Package INTRIGUE

Current CRAN status: NOTE: 6, OK: 7

Version: 0.1.0
Check: dependencies in R code
Result: NOTE
    Namespace in Imports field not imported from: ‘dplyr’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Package lcra

Current CRAN status: OK: 13

Package MetaIntegration

Current CRAN status: NOTE: 13

Version: 0.1.2
Check: LazyData
Result: NOTE
     'LazyData' is specified without a 'data' directory
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.1.2
Check: dependencies in R code
Result: NOTE
    Namespace in Imports field not imported from: ‘knitr’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Package PPMR

Current CRAN status: NOTE: 1, OK: 12

Version: 1.0
Check: installed package size
Result: NOTE
     installed size is 5.4Mb
     sub-directories of 1Mb or more:
     libs 5.2Mb
Flavor: r-oldrel-macos-arm64

Package qif

Current CRAN status: OK: 13

Package snSMART

Current CRAN status: ERROR: 5, OK: 8

Version: 0.1.0
Check: examples
Result: ERROR
    Running examples in 'snSMART-Ex.R' failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: BJSM_binary
    > ### Title: BJSM for snSMART (3 active treatments/placebo and 2 dose level)
    > ### with binary outcome
    > ### Aliases: BJSM_binary print.BJSM_binary print.BJSM_dose_binary
    >
    > ### ** Examples
    >
    > mydata = data_binary
    >
    > BJSM_result = BJSM_binary(data = mydata, prior_dist = c("beta", "beta", "pareto"),
    + pi_prior = c(0.4, 1.6, 0.4, 1.6, 0.4, 1.6), beta_prior = c(1.6, 0.4, 3, 1),
    + n_MCMC_chain = 1, BURN.IN = 1000, MCMC_SAMPLE = 2000, ci = 0.95,
    + six = TRUE, DTR = TRUE)
    Warning in file(con, "w") :
     cannot open file '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/snSMART/BJSM_6betas_missing_new.bug': Read-only file system
    Error in file(con, "w") : cannot open the connection
    Calls: BJSM_binary -> writeLines -> file
    Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.1.0
Check: examples
Result: ERROR
    Running examples in ‘snSMART-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: BJSM_binary
    > ### Title: BJSM for snSMART (3 active treatments/placebo and 2 dose level)
    > ### with binary outcome
    > ### Aliases: BJSM_binary print.BJSM_binary print.BJSM_dose_binary
    >
    > ### ** Examples
    >
    > mydata = data_binary
    >
    > BJSM_result = BJSM_binary(data = mydata, prior_dist = c("beta", "beta", "pareto"),
    + pi_prior = c(0.4, 1.6, 0.4, 1.6, 0.4, 1.6), beta_prior = c(1.6, 0.4, 3, 1),
    + n_MCMC_chain = 1, BURN.IN = 1000, MCMC_SAMPLE = 2000, ci = 0.95,
    + six = TRUE, DTR = TRUE)
    Warning in file(con, "w") :
     cannot open file '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/snSMART/BJSM_6betas_missing_new.bug': Read-only file system
    Error in file(con, "w") : cannot open the connection
    Calls: BJSM_binary -> writeLines -> file
    Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.1.0
Check: examples
Result: ERROR
    Running examples in ‘snSMART-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: BJSM_binary
    > ### Title: BJSM for snSMART (3 active treatments/placebo and 2 dose level)
    > ### with binary outcome
    > ### Aliases: BJSM_binary print.BJSM_binary print.BJSM_dose_binary
    >
    > ### ** Examples
    >
    > mydata = data_binary
    >
    > BJSM_result = BJSM_binary(data = mydata, prior_dist = c("beta", "beta", "pareto"),
    + pi_prior = c(0.4, 1.6, 0.4, 1.6, 0.4, 1.6), beta_prior = c(1.6, 0.4, 3, 1),
    + n_MCMC_chain = 1, BURN.IN = 1000, MCMC_SAMPLE = 2000, ci = 0.95,
    + six = TRUE, DTR = TRUE)
    Warning in file(con, "w") :
     cannot open file '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/snSMART/BJSM_6betas_missing_new.bug': Read-only file system
    Error in file(con, "w") : cannot open the connection
    Calls: BJSM_binary -> writeLines -> file
    Execution halted
Flavor: r-patched-linux-x86_64

Version: 0.1.0
Check: examples
Result: ERROR
    Running examples in ‘snSMART-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: BJSM_binary
    > ### Title: BJSM for snSMART (3 active treatments/placebo and 2 dose level)
    > ### with binary outcome
    > ### Aliases: BJSM_binary print.BJSM_binary print.BJSM_dose_binary
    >
    > ### ** Examples
    >
    > mydata = data_binary
    >
    > BJSM_result = BJSM_binary(data = mydata, prior_dist = c("beta", "beta", "pareto"),
    + pi_prior = c(0.4, 1.6, 0.4, 1.6, 0.4, 1.6), beta_prior = c(1.6, 0.4, 3, 1),
    + n_MCMC_chain = 1, BURN.IN = 1000, MCMC_SAMPLE = 2000, ci = 0.95,
    + six = TRUE, DTR = TRUE)
    Warning in file(con, "w") :
     cannot open file '/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/snSMART/BJSM_6betas_missing_new.bug': Read-only file system
    Error in file(con, "w") : cannot open the connection
    Calls: BJSM_binary -> writeLines -> file
    Execution halted
Flavor: r-release-linux-x86_64

Version: 0.1.0
Check: PDF version of manual
Result: WARN
    LaTeX errors when creating PDF version.
    This typically indicates Rd problems.
    LaTeX errors found:
    ! Package inputenc Error: Unicode char â<c2><80><c2><90> (U+2010)
    (inputenc) not set up for use with LaTeX.
    
    See the inputenc package documentation for explanation.
    Type H <return> for immediate help.
Flavor: r-oldrel-windows-ix86+x86_64

Version: 0.1.0
Check: PDF version of manual without hyperrefs or index
Result: ERROR
Flavor: r-oldrel-windows-ix86+x86_64

Package StackImpute

Current CRAN status: NOTE: 6, OK: 7

Version: 0.1.0
Check: dependencies in R code
Result: NOTE
    Namespaces in Imports field not imported from:
     ‘MASS’ ‘mice’ ‘sandwich’ ‘zoo’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Package SynDI

Current CRAN status: NOTE: 6, OK: 7

Version: 0.1.0
Check: dependencies in R code
Result: NOTE
    Namespaces in Imports field not imported from:
     ‘MASS’ ‘StackImpute’ ‘arm’ ‘boot’ ‘broom’ ‘knitr’ ‘mvtnorm’
     ‘randomForest’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64