Last updated on 2022-09-11 12:56:18 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.5 | 61.83 | 537.43 | 599.26 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.5 | 46.22 | 392.57 | 438.79 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1.5 | 775.60 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1.5 | 722.46 | OK | |||
| r-devel-windows-x86_64 | 1.1.5 | 69.00 | 541.00 | 610.00 | NOTE | |
| r-patched-linux-x86_64 | 1.1.5 | 52.54 | 502.08 | 554.62 | OK | |
| r-release-linux-x86_64 | 1.1.5 | 52.24 | 519.36 | 571.60 | OK | |
| r-release-macos-arm64 | 1.1.5 | 6.00 | ERROR | |||
| r-release-macos-x86_64 | 1.1.5 | 8.00 | ERROR | |||
| r-release-windows-x86_64 | 1.1.5 | 76.00 | 567.00 | 643.00 | NOTE | |
| r-oldrel-macos-arm64 | 1.1.5 | 10.00 | ERROR | |||
| r-oldrel-macos-x86_64 | 1.1.5 | 12.00 | ERROR | |||
| r-oldrel-windows-ix86+x86_64 | 1.1.5 | 122.00 | 516.00 | 638.00 | WARN |
Version: 1.1.5
Check: installed package size
Result: NOTE
installed size is 10.7Mb
sub-directories of 1Mb or more:
doc 9.3Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.1.5
Check: package dependencies
Result: ERROR
Package required but not available: ‘cBioPortalData’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 1.1.5
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building 'chart_themes.Rmd' using rmarkdown
g3viz: visualizing gene/genome/gentics data for fun.
- Pfam (v33.1)
- UniProt (date: 2022/07/01)
Any questions, please send emails to <g3viz.group@gmail.com> or post on GitHub <https://github.com/G3viz/g3viz/issues>.
Loading required package: AnVIL
Loading required package: dplyr
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Loading required package: MultiAssayExperiment
Loading required package: SummarizedExperiment
Loading required package: MatrixGenerics
Loading required package: matrixStats
Attaching package: 'matrixStats'
The following object is masked from 'package:dplyr':
count
Attaching package: 'MatrixGenerics'
The following objects are masked from 'package:matrixStats':
colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse,
colCounts, colCummaxs, colCummins, colCumprods, colCumsums,
colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs,
colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats,
colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds,
colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads,
colWeightedMeans, colWeightedMedians, colWeightedSds,
colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet,
rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods,
rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps,
rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins,
rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks,
rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars,
rowWeightedMads, rowWeightedMeans, rowWeightedMedians,
rowWeightedSds, rowWeightedVars
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:dplyr':
combine, intersect, setdiff, union
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which.max, which.min
Loading required package: S4Vectors
Attaching package: 'S4Vectors'
The following objects are masked from 'package:dplyr':
first, rename
The following objects are masked from 'package:base':
I, expand.grid, unname
Loading required package: IRanges
Attaching package: 'IRanges'
The following objects are masked from 'package:dplyr':
collapse, desc, slice
The following object is masked from 'package:grDevices':
windows
Loading required package: GenomeInfoDb
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Attaching package: 'Biobase'
The following object is masked from 'package:MatrixGenerics':
rowMedians
The following objects are masked from 'package:matrixStats':
anyMissing, rowMedians
--- finished re-building 'chart_themes.Rmd'
--- re-building 'introduction.Rmd' using rmarkdown
g3viz: visualizing gene/genome/gentics data for fun.
- Pfam (v33.1)
- UniProt (date: 2022/07/01)
Any questions, please send emails to <g3viz.group@gmail.com> or post on GitHub <https://github.com/G3viz/g3viz/issues>.
Quitting from lines 240-253 (introduction.Rmd)
Error: processing vignette 'introduction.Rmd' failed with diagnostics:
cannot open URL 'https://www.cbioportal.org/api/api-docs'
--- failed re-building 'introduction.Rmd'
SUMMARY: processing the following file failed:
'introduction.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64